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    LOC4333060 uncharacterized LOC4333060 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333060, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4333060
    Gene description
    uncharacterized LOC4333060
    Locus tag
    OSNPB_030401100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in roots after flowering (RPKM 43.0), leaves before flowering (RPKM 34.9) and 2 other tissues See more
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    Genomic context

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    See LOC4333060 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (16636639..16644407)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (16282699..16290468)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At1g74360 Neighboring gene uncharacterized LOC107280242 Neighboring gene uncharacterized LOC112938358 Neighboring gene uncharacterized LOC4333061 Neighboring gene sucrose synthase 1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    serine/threonine-protein kinase EDR1; uncharacterized protein LOC4333060
    Names
    Os03g0401100
    dual specificity protein kinase shkD

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      16636639..16644407
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015774352.3 → XP_015629838.1  uncharacterized protein LOC4333060 isoform X1

      UniProtKB/TrEMBL
      B9F8W9, Q10K11, Q94H84
      Conserved Domains (2) summary
      cd06410
      Location:50 → 144
      PB1_UP2; Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. ...
      cd13999
      Location:587 → 844
      STKc_MAP3K-like; Catalytic domain of Mitogen-Activated Protein Kinase (MAPK) Kinase Kinase-like Serine/Threonine kinases

    2. XM_015774354.3 → XP_015629840.1  uncharacterized protein LOC4333060 isoform X2

      UniProtKB/TrEMBL
      B9F8W9
      Conserved Domains (2) summary
      cd06410
      Location:50 → 144
      PB1_UP2; Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. ...
      cd13999
      Location:564 → 821
      STKc_MAP3K-like; Catalytic domain of Mitogen-Activated Protein Kinase (MAPK) Kinase Kinase-like Serine/Threonine kinases

    3. XM_015774355.3 → XP_015629841.1  uncharacterized protein LOC4333060 isoform X3

      UniProtKB/TrEMBL
      B9F8W9
      Conserved Domains (2) summary
      cd06410
      Location:50 → 144
      PB1_UP2; Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. ...
      cl21453
      Location:587 → 770
      PKc_like; Protein Kinases, catalytic domain

    4. XM_015774353.3 → XP_015629839.1  uncharacterized protein LOC4333060 isoform X1

      UniProtKB/TrEMBL
      B9F8W9, Q10K11, Q94H84
      Conserved Domains (2) summary
      cd06410
      Location:50 → 144
      PB1_UP2; Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. ...
      cd13999
      Location:587 → 844
      STKc_MAP3K-like; Catalytic domain of Mitogen-Activated Protein Kinase (MAPK) Kinase Kinase-like Serine/Threonine kinases

    5. XM_066308570.1 → XP_066164667.1  uncharacterized protein LOC4333060 isoform X2

      UniProtKB/TrEMBL
      B9F8W9

    6. XM_066308571.1 → XP_066164668.1  serine/threonine-protein kinase EDR1 isoform X4

      UniProtKB/TrEMBL
      B9F8W9

    RNA

    1. XR_010740035.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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