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    LOC4342065 FCS-Like Zinc finger 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342065, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4342065
    Gene description
    FCS-Like Zinc finger 1
    Locus tag
    OSNPB_060714800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0481E08.7
    Expression
    Broad expression in flowers (RPKM 51.3), flower buds (RPKM 36.6) and 4 other tissues See more
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    Genomic context

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    See LOC4342065 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (31209775..31210798)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (30340372..30341810)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4342062 Neighboring gene ras-related protein RABA3 Neighboring gene uncharacterized LOC107278395 Neighboring gene uncharacterized LOC4342064 Neighboring gene probable serine/threonine-protein kinase PBL19 Neighboring gene vacuolar protein sorting 38

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    FCS-Like Zinc finger 1
    Names
    Os06g0714800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      31209775..31210798
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015787204.3 → XP_015642690.1  FCS-Like Zinc finger 1

      UniProtKB/TrEMBL
      A0A0P0X0W3, A3BFD6, Q0D9I1, Q5Z9Q5
      Conserved Domains (1) summary
      pfam04570
      Location:43 → 85
      zf-FLZ; zinc-finger of the FCS-type, C2-C2
    Nucleotide Protein
    Heading Accession and Version

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