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    LOC4351049 acyl-CoA-binding domain-containing protein 6-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351049, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4351049
    Gene description
    acyl-CoA-binding domain-containing protein 6-like
    Locus tag
    OSNPB_110657000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4351049 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (28261224..28266904)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (26300002..26305753)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene putative glutaredoxin-C12 Neighboring gene glutaredoxin pseudogene Neighboring gene peptide chain release factor APG3, chloroplastic Neighboring gene alkylated DNA repair protein ALKBH8 homolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    acyl-CoA-binding domain-containing protein 6-like
    Names
    Os11g0657000
    acyl-CoA-binding domain-containing protein 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      28261224..28266904
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015761742.3 → XP_015617228.1  acyl-CoA-binding domain-containing protein 6-like isoform X1

      UniProtKB/TrEMBL
      B8BLN2
      Conserved Domains (6) summary
      sd00038
      Location:207 → 254
      Kelch; KELCH repeat [structural motif]
      pfam01344
      Location:97 → 140
      Kelch_1; Kelch motif
      pfam04871
      Location:568 → 652
      Uso1_p115_C; Uso1 / p115 like vesicle tethering protein, C terminal region
      pfam13415
      Location:216 → 266
      Kelch_3; Galactose oxidase, central domain
      pfam13418
      Location:257 → 302
      Kelch_4; Galactose oxidase, central domain
      cl02219
      Location:552 → 609
      Bap31; B-cell receptor-associated protein 31-like

    2. XM_015761743.3 → XP_015617229.1  acyl-CoA-binding domain-containing protein 6-like isoform X2

      UniProtKB/TrEMBL
      B8BLN2, B9G8N4
      Conserved Domains (6) summary
      sd00038
      Location:201 → 248
      Kelch; KELCH repeat [structural motif]
      pfam01344
      Location:91 → 134
      Kelch_1; Kelch motif
      pfam04871
      Location:562 → 646
      Uso1_p115_C; Uso1 / p115 like vesicle tethering protein, C terminal region
      pfam13415
      Location:210 → 260
      Kelch_3; Galactose oxidase, central domain
      pfam13418
      Location:251 → 296
      Kelch_4; Galactose oxidase, central domain
      cl02219
      Location:546 → 603
      Bap31; B-cell receptor-associated protein 31-like
    Nucleotide Protein
    Heading Accession and Version

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