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    LOC4350949 protein ELF4-LIKE 4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4350949, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4350949
    Gene description
    protein ELF4-LIKE 4
    Locus tag
    OSNPB_110621500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 12.1), roots after flowering (RPKM 10.9) and 5 other tissues See more
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    Genomic context

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    See LOC4350949 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (26181962..26184937)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (24230373..24233408)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene glycine-rich domain-containing protein 1 Neighboring gene stress enhanced protein 1, chloroplastic Neighboring gene protein MAIN-LIKE 2-like Neighboring gene uncharacterized LOC9266845

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in entrainment of circadian clock IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of circadian rhythm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein ELF4-LIKE 4
    Names
    Os11g0621500

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      26181962..26184937
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015762510.3 → XP_015617996.1  protein ELF4-LIKE 4

      UniProtKB/TrEMBL
      B9G8M4, Q2R122
      Conserved Domains (1) summary
      pfam07011
      Location:14 → 96
      DUF1313; Protein of unknown function (DUF1313)

    2. XM_015762511.3 → XP_015617997.1  protein ELF4-LIKE 4

      UniProtKB/TrEMBL
      B9G8M4, Q2R122
      Conserved Domains (1) summary
      pfam07011
      Location:14 → 96
      DUF1313; Protein of unknown function (DUF1313)

    3. XM_015762509.3 → XP_015617995.1  protein ELF4-LIKE 4

      UniProtKB/TrEMBL
      B9G8M4, Q2R122
      Conserved Domains (1) summary
      pfam07011
      Location:14 → 96
      DUF1313; Protein of unknown function (DUF1313)

    4. XM_015762506.3 → XP_015617992.1  protein ELF4-LIKE 4

      UniProtKB/TrEMBL
      B9G8M4, Q2R122
      Conserved Domains (1) summary
      pfam07011
      Location:14 → 96
      DUF1313; Protein of unknown function (DUF1313)

    5. XM_015762512.3 → XP_015617998.1  protein ELF4-LIKE 4

      UniProtKB/TrEMBL
      B9G8M4, Q2R122
      Conserved Domains (1) summary
      pfam07011
      Location:14 → 96
      DUF1313; Protein of unknown function (DUF1313)

    6. XM_015762508.3 → XP_015617994.1  protein ELF4-LIKE 4

      UniProtKB/TrEMBL
      B9G8M4, Q2R122
      Conserved Domains (1) summary
      pfam07011
      Location:14 → 96
      DUF1313; Protein of unknown function (DUF1313)

    7. XM_026021541.2 → XP_025877326.1  protein ELF4-LIKE 4

      UniProtKB/TrEMBL
      B9G8M4, Q2R122
      Conserved Domains (1) summary
      pfam07011
      Location:14 → 96
      DUF1313; Protein of unknown function (DUF1313)
    Nucleotide Protein
    Heading Accession and Version

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