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    LOC4324965 uncharacterized LOC4324965 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324965, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4324965
    Gene description
    uncharacterized LOC4324965
    Locus tag
    OSNPB_010894700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 30.6), flowers (RPKM 15.9) and 4 other tissues See more
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    Genomic context

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    See LOC4324965 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (39532181..39534343, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (38900598..38902764, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene fructokinase-1-like Neighboring gene uncharacterized LOC4324963 Neighboring gene uncharacterized LOC4324964 Neighboring gene probable membrane-associated 30 kDa protein, chloroplastic Neighboring gene cytochrome b561 and DOMON domain-containing protein At3g07570

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables peptidyl-prolyl cis-trans isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein folding chaperone IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ribosome binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in 'de novo' cotranslational protein folding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in chaperone-mediated protein folding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein unfolding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4324965
    Names
    B1078G07.49
    Os01g0894700
    P0696G06.13

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      39532181..39534343 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015776565.3 → XP_015632051.1  uncharacterized protein LOC4324965 isoform X4

      UniProtKB/TrEMBL
      A0A0P0VBJ2, B8A7T9, Q5JLV2
      Conserved Domains (1) summary
      pfam05697
      Location:84 → 211
      Trigger_N; Bacterial trigger factor protein (TF)

    2. XM_015776556.3 → XP_015632042.1  uncharacterized protein LOC4324965 isoform X3

      Conserved Domains (1) summary
      pfam05697
      Location:94 → 214
      Trigger_N; Bacterial trigger factor protein (TF)

    3. XM_066306777.1 → XP_066162874.1  uncharacterized protein LOC4324965 isoform X2

    4. XM_015776548.3 → XP_015632034.1  uncharacterized protein LOC4324965 isoform X1

      Conserved Domains (1) summary
      pfam05697
      Location:98 → 218
      Trigger_N; Bacterial trigger factor protein (TF)
    Nucleotide Protein
    Heading Accession and Version

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