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    LOC9270408 putative potassium transporter 12 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9270408, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC9270408
    Gene description
    putative potassium transporter 12
    Locus tag
    OSNPB_080206400
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    HAK12; OsHAK12; OsJ_26409
    Expression
    Ubiquitous expression in roots before flowering (RPKM 20.7), flower buds (RPKM 8.8) and 6 other tissues See more
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    Genomic context

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    See LOC9270408 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (6257212..6262690)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (6205683..6211524)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene cysteine-rich and transmembrane domain-containing protein WIH2 Neighboring gene probable gamma-aminobutyrate transaminase 3, mitochondrial Neighboring gene nuclear transcription factor Y subunit C-4-like Neighboring gene uncharacterized LOC4344931

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables potassium ion transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in potassium ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative potassium transporter 12
    Names
    LOC_Os08g10550
    putative potasium transporter

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001424510.1 → NP_001411439.1  putative potassium transporter 12

      Status: VALIDATED

      Source sequence(s)
      AK069377, AP014964
      UniProtKB/Swiss-Prot
      A3BQM5, B7EGA9, Q0J7B3, Q8VXB1

    RNA

    1. NR_188765.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK069377

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      6257212..6262690
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794865.3 → XP_015650351.1  putative potassium transporter 12 isoform X1

      Conserved Domains (1) summary
      cl15781
      Location:13 → 760
      K_trans; K+ potassium transporter

    2. XM_066312895.1 → XP_066168992.1  putative potassium transporter 12 isoform X2

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8VXB1.1 GenPept UniProtKB/Swiss-Prot:Q8VXB1

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