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    LOC4351372 uncharacterized LOC4351372 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351372, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4351372
    Gene description
    uncharacterized LOC4351372
    Locus tag
    OSNPB_120124000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 29.0), roots after flowering (RPKM 24.2) and 5 other tissues See more
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    Genomic context

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    See LOC4351372 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (1180875..1182708)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (1156640..1158373)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136354742 Neighboring gene uncharacterized LOC4351371 Neighboring gene disease resistance protein RGA2 Neighboring gene small ribosomal subunit protein uS9 Neighboring gene probable arabinosyltransferase ARAD1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in miRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4351372
    Names
    Os12g0124000
    nuclear envelope pore membrane protein POM 121

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      1180875..1182708
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015764516.3 → XP_015620002.1  uncharacterized protein LOC4351372 isoform X1

      UniProtKB/TrEMBL
      A0A0P0Y6G0, Q2QYC9
      Conserved Domains (1) summary
      cd00060
      Location:137 → 248
      FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...

    2. XM_015764518.3 → XP_015620004.1  uncharacterized protein LOC4351372 isoform X3

      UniProtKB/TrEMBL
      A0A0P0Y6G0
      Conserved Domains (2) summary
      COG1716
      Location:163 → 256
      FHA; Forkhead associated (FHA) domain, binds pSer, pThr, pTyr [Signal transduction mechanisms]
      cd00060
      Location:137 → 233
      FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...

    3. XM_015764517.3 → XP_015620003.1  uncharacterized protein LOC4351372 isoform X2

      UniProtKB/TrEMBL
      A0A0P0Y6G0
      Conserved Domains (1) summary
      cd00060
      Location:137 → 247
      FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...

    4. XM_015764519.3 → XP_015620005.1  uncharacterized protein LOC4351372 isoform X4

      UniProtKB/TrEMBL
      A0A0P0Y6G0, A0A8J8XAK5, B8BLT0, B9GBM0, Q2QYD1
      Conserved Domains (1) summary
      cd00060
      Location:137 → 232
      FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
    Nucleotide Protein
    Heading Accession and Version

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