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    LOC4328733 protein CLP1 homolog [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328733, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4328733
    Gene description
    protein CLP1 homolog
    Locus tag
    OSNPB_020217500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0027A02.1
    Expression
    Ubiquitous expression in flower buds (RPKM 14.4), roots after flowering (RPKM 12.2) and 6 other tissues See more
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    Genomic context

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    See LOC4328733 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (6591419..6595807)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (6568146..6572503)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene premnaspirodiene oxygenase Neighboring gene premnaspirodiene oxygenase Neighboring gene serine/threonine-protein phosphatase PP2A-3 catalytic subunit-like Neighboring gene 25S rRNA (cytosine-C(5))-methyltransferase NSUN5 Neighboring gene 19.0 kDa class II heat shock protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables polynucleotide 5'-hydroxyl-kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in tRNA splicing, via endonucleolytic cleavage and ligation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of mRNA cleavage factor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein CLP1 homolog
    Names
    Os02g0217500
    putative ATP/GTP-binding protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001409860.1 → NP_001396789.1  protein CLP1 homolog

      Status: VALIDATED

      Source sequence(s)
      AK058267, AP014958, CI076647
      UniProtKB/TrEMBL
      B9F4A6, Q0E2S5, Q6Z6M0

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      6591419..6595807
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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