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    LOC4345963 uncharacterized LOC4345963 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345963, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4345963
    Gene description
    uncharacterized LOC4345963
    Locus tag
    OSNPB_080502800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1345_D02.42; OJ1506_F01.14
    Expression
    Ubiquitous expression in roots after flowering (RPKM 17.7), leaves before flowering (RPKM 16.7) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 8
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (24983222..24987667)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (24837632..24842094)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene serine--glyoxylate aminotransferase Neighboring gene uncharacterized LOC136351439 Neighboring gene uncharacterized LOC107276284 Neighboring gene uncharacterized LOC4345964 Neighboring gene glycerophosphodiester phosphodiesterase GDPDL3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4345963
    Names
    Os08g0502800
    parathymosin-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      24983222..24987667
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795572.3 → XP_015651058.1  uncharacterized protein LOC4345963 isoform X1

      UniProtKB/TrEMBL
      A0A0P0XHR0, B8BCD6, Q6ZFI5
      Conserved Domains (2) summary
      cd10567
      Location:221 → 291
      SWIB-MDM2_like; SWIB/MDM2 domain found in SWIB/MDM2 homologous proteins
      pfam02201
      Location:326 → 399
      SWIB; SWIB/MDM2 domain

    2. XM_015795573.3 → XP_015651059.1  uncharacterized protein LOC4345963 isoform X2

      UniProtKB/TrEMBL
      B8BCD6
      Conserved Domains (1) summary
      pfam02201
      Location:219 → 291
      SWIB; SWIB/MDM2 domain
    Nucleotide Protein
    Heading Accession and Version

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