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    LOC4335430 probable ribose-5-phosphate isomerase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4335430, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4335430
    Gene description
    probable ribose-5-phosphate isomerase 1
    Locus tag
    OSNPB_040306400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (14038601..14039739)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (13802282..13803484)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene UDP-glycosyltransferase 90A1 Neighboring gene pathogenesis-related thaumatin-like protein 3.7 Neighboring gene preprotein translocase subunit SECE1 Neighboring gene uncharacterized LOC4335431

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ribose-5-phosphate isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in pentose-phosphate shunt, non-oxidative branch IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable ribose-5-phosphate isomerase 1
    Names
    Os04g0306400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      14038601..14039739
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015777904.2 → XP_015633390.1  probable ribose-5-phosphate isomerase 1

      UniProtKB/TrEMBL
      A3AS68, Q01M03, Q7XVP0
      Conserved Domains (1) summary
      cl00339
      Location:31 → 268
      SugarP_isomerase; Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose ...
    Nucleotide Protein
    Heading Accession and Version

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