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    LOC4324997 protein DMP7 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324997, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4324997
    Gene description
    protein DMP7
    Locus tag
    OSNPB_010882400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 29.2), flowers (RPKM 11.1) and 6 other tissues See more
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    Genomic context

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    See LOC4324997 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (38935744..38936875)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (38305599..38306727)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene transcription factor TGAL3-like Neighboring gene probable magnesium transporter NIPA4 Neighboring gene NAD(P)H-quinone oxidoreductase subunit N, chloroplastic Neighboring gene amino acid permease 4 Neighboring gene probable receptor-like protein kinase At1g11050 Neighboring gene MADS-box transcription factor 2-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in endomembrane system organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein DMP7
    Names
    B1065E10.25
    Os01g0882400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      38935744..38936875
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015765501.3 → XP_015620987.1  protein DMP7

      UniProtKB/TrEMBL
      B8A7B1, Q0JH56, Q5N7I6
      Conserved Domains (1) summary
      pfam05078
      Location:47 → 214
      DUF679; Protein of unknown function (DUF679)
    Nucleotide Protein
    Heading Accession and Version

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