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    LOC4329165 fatty-acid-binding protein 3, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329165, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4329165
    Gene description
    fatty-acid-binding protein 3, chloroplastic
    Locus tag
    OSNPB_020320300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 7.6), flower buds (RPKM 5.9) and 6 other tissues See more
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    Genomic context

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    See LOC4329165 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (12800791..12807629)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (12765227..12772116)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene plant cysteine oxidase 3 Neighboring gene rRNA (cytosine-C(5))-methyltransferase NOP2C Neighboring gene uncharacterized LOC107277773 Neighboring gene uncharacterized LOC136355222

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables fatty acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables intramolecular lyase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in fatty acid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast stroma IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    fatty-acid-binding protein 3, chloroplastic
    Names
    OSJNBa0086N11.26
    Os02g0320300
    chalcone isomerase-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      12800791..12807629
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767838.3 → XP_015623324.1  fatty-acid-binding protein 3, chloroplastic

      UniProtKB/TrEMBL
      A0A0P0VI88, B9F5C3, Q6EQW2
      Conserved Domains (1) summary
      cl03589
      Location:74 → 278
      Chalcone_3; Chalcone isomerase-like
    Nucleotide Protein
    Heading Accession and Version

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