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    LOC4347105 uncharacterized LOC4347105 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347105, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4347105
    Gene description
    uncharacterized LOC4347105
    Locus tag
    OSNPB_090424600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 17.0), flowers (RPKM 16.3) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 9
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (19778883..19784533)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (15400684..15406407)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene gamma-glutamyl peptidase 3 Neighboring gene S-adenosylmethionine decarboxylase proenzyme Neighboring gene uncharacterized LOC112936460 Neighboring gene protein GAMETE EXPRESSED 2 Neighboring gene glutathione S-transferase T3-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 5'-nucleotidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4347105
    Names
    5'-nucleotidase domain-containing protein DDB_G0275467
    Os09g0424600
    P0418B08.32
    nucleotidase-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      19778883..19784533
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795852.3 → XP_015651338.1  uncharacterized protein LOC4347105

      UniProtKB/TrEMBL
      A0A0P0XNA2, B8BFA6, B9G3N6, Q69QI6
      Conserved Domains (1) summary
      pfam05761
      Location:89 → 524
      5_nucleotid; 5' nucleotidase family
    Nucleotide Protein
    Heading Accession and Version

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