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    LOC4344153 glyoxylase I 4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344153, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4344153
    Gene description
    glyoxylase I 4
    Locus tag
    OSNPB_070657100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Restricted expression toward mature seeds (RPKM 114.7) See more
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    Genomic context

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    See LOC4344153 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (27880514..27881696, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (27652944..27654094, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4344151 Neighboring gene serine carboxypeptidase II-3 Neighboring gene protein transport protein SEC31 homolog B Neighboring gene xylan glycosyltransferase MUCI21

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    glyoxylase I 4
    Names
    Os07g0657100
    P0047B07.119
    glyoxalase family-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      27880514..27881696 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015790339.3 → XP_015645825.1  glyoxylase I 4

      UniProtKB/TrEMBL
      A0A0P0X9Y6, A3BN03, Q7EYX8
      Conserved Domains (1) summary
      cd07245
      Location:60 → 181
      VOC_like; uncharacterized subfamily of vicinal oxygen chelate (VOC) family
    Nucleotide Protein
    Heading Accession and Version

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