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    LOC4325426 uncharacterized LOC4325426 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325426, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4325426
    Gene description
    uncharacterized LOC4325426
    Locus tag
    OSNPB_010382700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 33.4), roots after flowering (RPKM 22.5) and 5 other tissues See more
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    Genomic context

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    See LOC4325426 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (16039207..16044486)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (15975307..15980568)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107275246 Neighboring gene uncharacterized LOC9271309 Neighboring gene uncharacterized LOC136354912 Neighboring gene uncharacterized LOC4325427 Neighboring gene exocyst complex component EXO70A1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent peptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metalloendopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4325426
    Names
    ATP-dependent Zn proteases-like protein
    OSJNBa0091E23.18-1
    Os01g0382700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      16039207..16044486
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015768515.3 → XP_015624001.1  uncharacterized protein LOC4325426 isoform X1

      UniProtKB/TrEMBL
      A0A0P0V2Q0, B8A8M3, Q0JMM1, Q5VP08

    2. XM_015768660.3 → XP_015624146.1  uncharacterized protein LOC4325426 isoform X3

    3. XM_015768589.3 → XP_015624075.1  uncharacterized protein LOC4325426 isoform X2

      UniProtKB/TrEMBL
      B8A8M3
    Nucleotide Protein
    Heading Accession and Version

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