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    LOC4346641 peptidyl-prolyl cis-trans isomerase FKBP43 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346641, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4346641
    Gene description
    peptidyl-prolyl cis-trans isomerase FKBP43
    Locus tag
    OSNPB_090293900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4346641 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (11321904..11325482)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (6990898..6994552)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene ubiquitin-conjugating enzyme E2-17 kDa Neighboring gene brassinosteroid LRR receptor kinase BRL1-like Neighboring gene bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic Neighboring gene probable serine/threonine-protein kinase PIX13

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables peptidyl-prolyl cis-trans isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    peptidyl-prolyl cis-trans isomerase FKBP43
    Names
    OSJNBa0044K01.2
    Os09g0293900
    putative Peptidyl Prolyl cis-trans isomerase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      11321904..11325482
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015755324.3 → XP_015610810.1  peptidyl-prolyl cis-trans isomerase FKBP43

      UniProtKB/TrEMBL
      A0A0P0XLH9, Q0J2V8
      Conserved Domains (2) summary
      pfam00254
      Location:327 → 416
      FKBP_C; FKBP-type peptidyl-prolyl cis-trans isomerase
      pfam17800
      Location:3 → 95
      NPL; Nucleoplasmin-like domain
    Nucleotide Protein
    Heading Accession and Version

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