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    LOC4347729 probable aquaporin PIP2-7 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347729, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4347729
    Gene description
    probable aquaporin PIP2-7
    Locus tag
    OSNPB_090541000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    PIP2-7; OsPIP2;7; P0478E02.3
    Expression
    Biased expression in leaves before flowering (RPKM 2026.0), leaves after flowering (RPKM 262.7) and 1 other tissue See more
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    Genomic context

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    See LOC4347729 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (25752208..25753624)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (21310114..21311542)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene G-box-binding factor 1 Neighboring gene la-related protein 1B Neighboring gene mavicyanin Neighboring gene uncharacterized LOC107278891

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables water channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable aquaporin PIP2-7
    Names
    B1274F11.29-1
    B1274F11.29-2
    LOC_Os09g36930
    Plasma membrane intrinsic protein 2-7
    putative aquaporin
    putative water stress induced tonoplast intrinsic protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001403935.1 → NP_001390864.1  probable aquaporin PIP2-7

      Status: VALIDATED

      Source sequence(s)
      CB659087, CB684281, CI298751, CI433897
      UniProtKB/Swiss-Prot
      B7EE03, Q0IZY9, Q651D5, Q7XJ23
      UniProtKB/TrEMBL
      A2Z3L2, A3C132

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      25752208..25753624
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q651D5.2 GenPept UniProtKB/Swiss-Prot:Q651D5

    Gene LinkOut

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    Research Materials