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    LOC4346773 ankyrin repeat-containing protein At5g02620 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346773, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4346773
    Gene description
    ankyrin repeat-containing protein At5g02620
    Locus tag
    OSNPB_090337300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 7.7), leaves after flowering (RPKM 5.4) and 6 other tissues See more
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    Genomic context

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    See LOC4346773 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (14585556..14588238)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (10252098..10254796)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9269567 Neighboring gene ankyrin repeat-containing protein NPR4-like Neighboring gene uncharacterized LOC9269728 Neighboring gene uncharacterized LOC136351772

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ankyrin repeat-containing protein At5g02620
    Names
    Os09g0337300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      14585556..14588238
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795887.3 → XP_015651373.1  ankyrin repeat-containing protein At5g02620

      UniProtKB/TrEMBL
      A0A0P0XL27, A0A8J8XHL0, B9G306, Q0J2I9
      Conserved Domains (5) summary
      cd00204
      Location:93 → 210
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:86 → 146
      Ank_2; Ankyrin repeats (3 copies)
      pfam13637
      Location:130 → 187
      Ank_4; Ankyrin repeats (many copies)
      pfam13962
      Location:273 → 387
      PGG; Domain of unknown function
      sd00045
      Location:99 → 127
      ANK; ANK repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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