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    LOC4345951 heat shock protein 81-1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345951, updated on 6-Jun-2024

    Summary

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    Gene symbol
    LOC4345951
    Gene description
    heat shock protein 81-1
    Locus tag
    OSNPB_080500700
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    HSP82; HSP81-1; OJ1345_D02.4-1; OJ1345_D02.4-2; OJ1118_A06.20-1; OJ1118_A06.20-2
    Expression
    Broad expression in mature seeds (RPKM 87.8), flowers (RPKM 44.0) and 6 other tissues See more
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    Genomic context

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    See LOC4345951 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (24719149..24723563, complement)

    Chromosome 8 - NC_029263.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4345949 Neighboring gene pentatricopeptide repeat-containing protein At2g29760, chloroplastic Neighboring gene uncharacterized LOC4345952 Neighboring gene phosphoribosylglycinamide formyltransferase, chloroplastic

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029263.1 Chromosome 8 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent protein folding chaperone IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables unfolded protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellular response to heat IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein folding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein stabilization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in perinuclear region of cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of protein-containing complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    heat shock protein 81-1
    Names
    82kDa heat shock protein
    LOC_Os08g39140
    heat shock protein 82
    putative heat shock protein 82

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422617.1 → NP_001409546.1  heat shock protein 81-1

      Status: VALIDATED

      Source sequence(s)
      CI123156, CI310230, GQ848041
      UniProtKB/Swiss-Prot
      A2YWQ1, P33126, Q0J4P2, Q6ZK13
      UniProtKB/TrEMBL
      A2Z2G1, E0X6U7

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029263.1 Reference IRGSP-1.0 Primary Assembly

      Range
      24719149..24723563 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794192.2 → XP_015649678.1  heat shock protein 81-1

      UniProtKB/Swiss-Prot
      Q0J4P2
      UniProtKB/TrEMBL
      E0X6U7
      Conserved Domains (1) summary
      PTZ00272
      Location:5 → 699
      PTZ00272; heat shock protein 83 kDa (Hsp83); Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0J4P2.2 GenPept UniProtKB/Swiss-Prot:Q0J4P2

    Gene LinkOut

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