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    LOC4325283 YTH domain-containing protein ECT2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325283, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4325283
    Gene description
    YTH domain-containing protein ECT2
    Locus tag
    OSNPB_010679900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 38.0), flower buds (RPKM 32.3) and 6 other tissues See more
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    Genomic context

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    See LOC4325283 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (28571709..28578369)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (27983678..27990420)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene UPF0678 fatty acid-binding protein-like protein At1g79260 Neighboring gene 60S ribosomal protein L37a-1-like Neighboring gene probable purine permease 4 Neighboring gene transcription initiation factor TFIID subunit 11

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA destabilization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    YTH domain-containing protein ECT2
    Names
    B1144G04.45-1
    B1144G04.45-2
    B1144G04.45-3
    Os01g0679900
    YTH domain-containing family protein 2
    rubisco subunit binding-protein beta subunit-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      28571709..28578369
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066306940.1 → XP_066163037.1  YTH domain-containing protein ECT2 isoform X2

      UniProtKB/TrEMBL
      B7EPV3, Q5QM94

    2. XM_015791641.3 → XP_015647127.1  YTH domain-containing protein ECT2 isoform X1

      UniProtKB/TrEMBL
      A0A0P0V6J3, A0A0P0V6J8, A0A9K3Y810, Q0JKE5, Q5QM95, Q5QM96
      Conserved Domains (1) summary
      pfam04146
      Location:369 → 509
      YTH; YT521-B-like domain
    Nucleotide Protein
    Heading Accession and Version

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