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    LOC4326608 centromere protein C [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326608, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4326608
    Gene description
    centromere protein C
    Locus tag
    OSNPB_010617700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    CENP-C
    Expression
    Ubiquitous expression in flowers (RPKM 12.2), flower buds (RPKM 10.0) and 6 other tissues See more
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    Genomic context

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    See LOC4326608 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (25134649..25144066)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (24559237..24568635)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene protein ROOT PRIMORDIUM DEFECTIVE 1 Neighboring gene amino acid permease 4-like Neighboring gene uncharacterized LOC4326609 Neighboring gene psbP domain-containing protein 5, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Adaptive evolution of centromere proteins in plants and animals. Talbert PB, et al. J Biol, 2004. PMID 15345035, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables centromeric DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in attachment of mitotic spindle microtubules to kinetochore IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in kinetochore assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in spindle attachment to meiosis I kinetochore IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in kinetochore IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    centromere protein C; uncharacterized protein LOC4326608
    Names
    CENPCA protein-like
    Os01g0617700
    P0686E09.30

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      25134649..25144066
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066311415.1 → XP_066167512.1  uncharacterized protein LOC4326608 isoform X1

    2. XM_015776785.3 → XP_015632271.1  centromere protein C isoform X2

      UniProtKB/TrEMBL
      A0A0P0V5B5, B8ABW2, B9EY30, Q0JL80
      Conserved Domains (1) summary
      COG5253
      Location:551 → 832
      MSS4; Phosphatidylinositol-4-phosphate 5-kinase [Signal transduction mechanisms]
    Nucleotide Protein
    Heading Accession and Version

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