LOC4325282 60S ribosomal protein L37a-1-like [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4325282
Gene description: 60S ribosomal protein L37a-1-like
Locus tag: OSNPB_010679700
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: OsJ_03011; OsJ_018715; OJ1214_E03.13
Expression: Ubiquitous expression in flower buds (RPKM 290.8), mature seeds (RPKM 247.2) and 6 other tissues See more
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Genomic context

Location:: chromosome: 1

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
RS_2024_06	current	ASM3414082v1 (GCF_034140825.1)	1	NC_089035.1 (28553554..28556133, complement)
102	previous assembly	IRGSP-1.0 (GCF_001433935.1)	1	NC_029256.1 (27965707..27968169, complement)

Chromosome 1 - NC_089035.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables structural constituent of ribosome	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in translation	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in ribosome	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: large ribosomal subunit protein eL43z

Names: 60S ribosomal protein L37a; 60S ribosomal protein L37a-1; B1144G04.40-1; LOC_Os01g48770; LOC_Os05g48320; putative ribosomal protein L37a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001406235.1 → NP_001393164.1 large ribosomal subunit protein eL43z

Status: VALIDATED

Source sequence(s)

CI283654, CI778135

UniProtKB/Swiss-Prot

A2ZWJ4, B7E3N1, P0DKK1, P0DKK2, Q0JKE6, Q5QM99, Q6I606

UniProtKB/TrEMBL

A2Y7B6

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

NC_089035.1 Reference ASM3414082v1 Primary Assembly

Range

28553554..28556133 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015766803.2 → XP_015622289.1 large ribosomal subunit protein eL43z isoform X1

Conserved Domains (1) summary

PTZ00255
Location:5 → 92

PTZ00255; 60S ribosomal protein L37a; Provisional