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    LOC4336556 cyclin-P4-1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336556, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4336556
    Gene description
    cyclin-P4-1-like
    Locus tag
    OSNPB_040544200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flowers (RPKM 1.5), milk grains (RPKM 1.4) and 5 other tissues See more
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    Genomic context

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    See LOC4336556 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (27756682..27759148, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (27251706..27254283, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene glycine-rich cell wall structural protein 1-like Neighboring gene histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 Neighboring gene uncharacterized LOC136356075 Neighboring gene pentatricopeptide repeat-containing protein At1g02150

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein kinase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of cyclin-dependent protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cyclin-P4-1-like
    Names
    Os04g0544200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      27756682..27759148 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015778923.3 → XP_015634409.1  cyclin-P4-1-like

      UniProtKB/TrEMBL
      A0A0P0WD28, A2XW26, A3AW24, Q7XN03
      Conserved Domains (1) summary
      cl40454
      Location:48 → 172
      CYCLIN_SF; Cyclin box fold superfamily
    Nucleotide Protein
    Heading Accession and Version

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