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    LOC4328660 protein FAR1-RELATED SEQUENCE 5 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328660, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4328660
    Gene description
    protein FAR1-RELATED SEQUENCE 5
    Locus tag
    OSNPB_020202800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1135_F06.10-2
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 11.6), roots after flowering (RPKM 11.5) and 6 other tissues See more
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    Genomic context

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    See LOC4328660 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (5761209..5764361, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (5748307..5753797, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4328658 Neighboring gene probable serine acetyltransferase 1 Neighboring gene F-box/kelch-repeat protein At1g55270 Neighboring gene transcription factor HY5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein FAR1-RELATED SEQUENCE 5
    Names
    Os02g0202800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      5761209..5764361 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771248.3 → XP_015626734.1  protein FAR1-RELATED SEQUENCE 5

      UniProtKB/TrEMBL
      B8ADU4, B9F3W9, Q0E2Z0
      Conserved Domains (2) summary
      PLN03097
      Location:71 → 671
      FHY3; Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
      pfam12484
      Location:6 → 57
      PE_PPE_C; Polymorphic PE/PPE proteins C terminal
    Nucleotide Protein
    Heading Accession and Version

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