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    LOC4350946 uncharacterized LOC4350946 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4350946, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4350946
    Gene description
    uncharacterized LOC4350946
    Locus tag
    OSNPB_110621000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves after flowering (RPKM 17.5), roots before flowering (RPKM 16.2) and 6 other tissues See more
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    Genomic context

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    See LOC4350946 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (26162171..26166187, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (24210653..24214627, complement)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene pollen receptor-like kinase 3 Neighboring gene transfer RNA serine (anticodon GCU) Neighboring gene uncharacterized LOC107278736 Neighboring gene glycine-rich domain-containing protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4350946
    Names
    Os11g0621000
    transmembrane protein 45B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      26162171..26166187 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015762297.3 → XP_015617783.1  uncharacterized protein LOC4350946 isoform X2

      UniProtKB/TrEMBL
      Q0IRK5, Q2R126, Q9SBW4, Q9XEU5
      Conserved Domains (1) summary
      pfam04819
      Location:130 → 259
      DUF716; Family of unknown function (DUF716)

    2. XM_015762295.3 → XP_015617781.1  uncharacterized protein LOC4350946 isoform X1

      UniProtKB/TrEMBL
      Q2R127, Q9SBW4
      Conserved Domains (1) summary
      pfam04819
      Location:133 → 262
      DUF716; Family of unknown function (DUF716)

    3. XM_066305434.1 → XP_066161531.1  uncharacterized protein LOC4350946 isoform X2

      UniProtKB/TrEMBL
      Q0IRK5, Q2R126, Q9SBW4, Q9XEU5

    4. XM_015762296.3 → XP_015617782.1  uncharacterized protein LOC4350946 isoform X1

      UniProtKB/TrEMBL
      Q2R127, Q9SBW4
      Conserved Domains (1) summary
      pfam04819
      Location:133 → 262
      DUF716; Family of unknown function (DUF716)
    Nucleotide Protein
    Heading Accession and Version

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