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    LOC4331015 ATPase 8, plasma membrane-type [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331015, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4331015
    Gene description
    ATPase 8, plasma membrane-type
    Locus tag
    OSNPB_020797300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    a6; OJ1004_E04.31
    Expression
    Biased expression in flowers (RPKM 30.6) and flower buds (RPKM 25.0) See more
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    Genomic context

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    See LOC4331015 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (34427676..34432224)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (33931353..33936119)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene ethylene-responsive transcription factor ERF003 Neighboring gene 60S ribosomal protein L39 Neighboring gene DNA replication licensing factor MCM5-like Neighboring gene aspartate aminotransferase, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables P-type proton-exporting transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proton export across plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of intracellular pH IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ATPase 8, plasma membrane-type
    Names
    Os02g0797300
    plasma membrane H+-ATPase
    putative H+-exporting ATPase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      34427676..34432224
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767900.3 → XP_015623386.1  ATPase 8, plasma membrane-type

      UniProtKB/TrEMBL
      A2XAK8, A3ACA8, Q0DWS9, Q6KAJ5
      Conserved Domains (1) summary
      TIGR01647
      Location:34 → 805
      ATPase-IIIA_H; plasma-membrane proton-efflux P-type ATPase

    RNA

    1. XR_010739391.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Research Materials