LOC4338669 AP2-like ethylene-responsive transcription factor At2g41710 [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4338669
Gene description: AP2-like ethylene-responsive transcription factor At2g41710
Locus tag: OSNPB_050389000
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: RLA1; SMOS1
Expression: Broad expression in flower buds (RPKM 10.2), flowers (RPKM 6.9) and 6 other tissues See more
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 5

Exon count:: 10

Annotation release	Status	Assembly	Chr	Location
102	current	IRGSP-1.0 (GCF_001433935.1)	5	NC_029260.1 (18812070..18817749)

Chromosome 5 - NC_029260.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:: NC_029260.1 Chromosome 5 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help

See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Data indicate that the small organ size1 (smos1) mutants are loss-of-function mutants for Os05g0389000.
Title: A novel AP2-type transcription factor, SMALL ORGAN SIZE1, controls organ size downstream of an auxin signaling pathway.

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables DNA binding	IEA Inferred from Electronic Annotation more info	PubMed
enables DNA-binding transcription factor activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in regulation of DNA-templated transcription	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

Go to the top of the page Help

Preferred Names: AP2-like ethylene-responsive transcription factor At2g41710; aP2-like ethylene-responsive transcription factor SMOS1

Names: AP2 type transcription factor; AP2-like ethylene-responsive transcription factor SMOS1; LOC_Os05g32270; OSJNBa0073E05.20; Protein REDUCED LEAF ANGLE 1; Protein SMALL ORGAN SIZE 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001420478.1 → NP_001407407.1 aP2-like ethylene-responsive transcription factor SMOS1

Status: VALIDATED

Source sequence(s)

AB897877, AK059324, AP014961, CB643165

UniProtKB/Swiss-Prot

Q0DIH8, Q60E56, X5HYT8

UniProtKB/TrEMBL

B9FI25

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

NC_029260.1 Reference IRGSP-1.0 Primary Assembly

Range

18812070..18817749

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015782602.2 → XP_015638088.1 AP2-like ethylene-responsive transcription factor At2g41710

UniProtKB/TrEMBL

X5HYT8

Conserved Domains (1) summary

cl00033
Location:89 → 160

AP2; DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor ...