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    LOC4342850 probable cellulose synthase A catalytic subunit 6 [UDP-forming] [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342850, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4342850
    Gene description
    probable cellulose synthase A catalytic subunit 6 [UDP-forming]
    Locus tag
    OSNPB_070252400
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    CESA6; OsCesA6; OsJ_23733
    Expression
    Biased expression in roots before flowering (RPKM 85.0), flowers (RPKM 44.6) and 3 other tissues See more
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    Genomic context

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    See LOC4342850 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (8576802..8582519)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (8496294..8501901)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene protein CIA1 Neighboring gene uncharacterized LOC112939565 Neighboring gene uncharacterized LOC4342851 Neighboring gene uncharacterized LOC4342852

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cellulose synthase (UDP-forming) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellulose biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in plant-type primary cell wall biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in trans-Golgi network IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable cellulose synthase A catalytic subunit 6 [UDP-forming]
    Names
    LOC_Os07g14850
    P0669H03.13
    putative cellulose synthase-8
    NP_001409005.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422076.1 → NP_001409005.1  probable cellulose synthase A catalytic subunit 6 [UDP-forming]

      Status: VALIDATED

      Source sequence(s)
      AK100914, AU101892, CI396328, CI567943, D41261
      UniProtKB/Swiss-Prot
      B9FWG3, Q6YVM4
      UniProtKB/TrEMBL
      B8B4T1

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      8576802..8582519
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6YVM4.1 GenPept UniProtKB/Swiss-Prot:Q6YVM4

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