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    LOC4324553 small ribosomal subunit protein eS10z-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324553, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4324553
    Gene description
    small ribosomal subunit protein eS10z-like
    Locus tag
    OSNPB_010962600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 56.0), flowers (RPKM 39.1) and 6 other tissues See more
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    Genomic context

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    See LOC4324553 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (43077321..43079509, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (42425152..42427384, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene ubiquitin-fold modifier 1-like Neighboring gene putative box C/D snoRNA protein SPCC613.07 Neighboring gene cationic peroxidase SPC4 Neighboring gene cationic peroxidase SPC4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Screening of Proximal and Interacting Proteins in Rice Protoplasts by Proximity-Dependent Biotinylation. Lin Q, et al. Front Plant Sci, 2017. PMID 28553299, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic small ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    small ribosomal subunit protein eS10z-like
    Names
    Os01g0962600
    P0483G10.27
    putative 40S ribosomal protein S10

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      43077321..43079509 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015768162.3 → XP_015623648.1  small ribosomal subunit protein eS10z-like

      UniProtKB/TrEMBL
      A2WZD5, A3A1S7, Q0JFT4, Q94DM7
      Conserved Domains (1) summary
      pfam03501
      Location:3 → 94
      S10_plectin; Plectin/S10 domain
    Nucleotide Protein
    Heading Accession and Version

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