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    LOC4329236 phosphatidylinositol/phosphatidylcholine transfer protein SFH3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329236, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4329236
    Gene description
    phosphatidylinositol/phosphatidylcholine transfer protein SFH3
    Locus tag
    OSNPB_020440900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1008_E02.21
    Expression
    Biased expression in flower buds (RPKM 53.9) and flowers (RPKM 16.2) See more
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    Genomic context

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    See LOC4329236 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (14618533..14629155)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (14161274..14171795)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene probable diaminopimelate decarboxylase, chloroplastic Neighboring gene uncharacterized LOC136355184 Neighboring gene uncharacterized LOC136355074 Neighboring gene uncharacterized LOC107280054

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    • PZA00595_Zea_mays_ssp._parviglumis_Beadle_&_Kato_site_4 (e-PCR)

    Homology

    General protein information

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    Preferred Names
    phosphatidylinositol/phosphatidylcholine transfer protein SFH3
    Names
    Os02g0440900
    putative SEC14 cytosolic factor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      14618533..14629155
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015768583.3 → XP_015624069.1  phosphatidylinositol/phosphatidylcholine transfer protein SFH3 isoform X1

      UniProtKB/TrEMBL
      A0A0P0VIJ6, Q6ZG68
      Conserved Domains (2) summary
      smart00516
      Location:149 → 320
      SEC14; Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p)
      smart01100
      Location:83 → 129
      CRAL_TRIO_N; CRAL/TRIO, N-terminal domain

    2. XM_015768585.3 → XP_015624071.1  phosphatidylinositol/phosphatidylcholine transfer protein SFH3 isoform X3

      UniProtKB/TrEMBL
      Q6ZG68
      Conserved Domains (2) summary
      smart00516
      Location:149 → 320
      SEC14; Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p)
      smart01100
      Location:83 → 129
      CRAL_TRIO_N; CRAL/TRIO, N-terminal domain

    3. XM_015768584.3 → XP_015624070.1  phosphatidylinositol/phosphatidylcholine transfer protein SFH3 isoform X2

      UniProtKB/TrEMBL
      Q6ZG68
      Conserved Domains (2) summary
      smart00516
      Location:146 → 317
      SEC14; Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p)
      smart01100
      Location:80 → 126
      CRAL_TRIO_N; CRAL/TRIO, N-terminal domain

    4. XM_066307487.1 → XP_066163584.1  phosphatidylinositol/phosphatidylcholine transfer protein SFH3 isoform X4

      UniProtKB/TrEMBL
      Q6ZG68

    RNA

    1. XR_001542996.3 RNA Sequence

    2. XR_010739375.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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