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    LOC4344382 pyruvate decarboxylase 3-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344382, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4344382
    Gene description
    pyruvate decarboxylase 3-like
    Locus tag
    OSNPB_070693100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    PDC; PDC3; OsJ_024667
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    Genomic context

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    See LOC4344382 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (29724219..29726224)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (29489913..29491989)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene ubiquitin-activating enzyme E1 3 Neighboring gene protein MALE DISCOVERER 2 Neighboring gene transfer RNA histidin (anticodon GUG) Neighboring gene uncharacterized LOC4344385

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The rice pyruvate decarboxylase 3 gene, which lacks introns, is transcribed in mature pollen. Li Y, et al. J Exp Bot, 2004 Jan. PMID 14645394
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables magnesium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pyruvate decarboxylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables thiamine pyrophosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in aromatic amino acid family catabolic process to alcohol via Ehrlich pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pyruvate decarboxylase 3
    Names
    LOC_Os07g49250
    P0034A04.127-1
    P0034A04.127-2
    pyruvate decarboxylase isozyme 3
    pyruvate decarboxylase-like protein
    NP_001390207.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001403278.1 → NP_001390207.1  pyruvate decarboxylase 3

      Status: VALIDATED

      Source sequence(s)
      AB111050, CI355169, CI596689
      UniProtKB/Swiss-Prot
      B7EQF7, Q0D3D2

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      29724219..29726224
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0D3D2.1 GenPept UniProtKB/Swiss-Prot:Q0D3D2

    Gene LinkOut

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