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    LOC4347015 uncharacterized LOC4347015 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347015, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4347015
    Gene description
    uncharacterized LOC4347015
    Locus tag
    OSNPB_090407300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0465E03.2; OJ1261_A08.50
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    Genomic context

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    See LOC4347015 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (18745708..18751250, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (14368030..14373728, complement)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112936409 Neighboring gene probable ubiquitin receptor RAD23 Neighboring gene DNA mismatch repair protein MSH6 Neighboring gene haloacid dehalogenase-like hydrolase domain-containing protein Sgpp

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metalloendopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables polyubiquitin modification-dependent protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables single-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA damage response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4347015
    Names
    Os09g0407300
    sprT-like domain-containing protein Spartan

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      18745708..18751250 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015756301.3 → XP_015611787.1  uncharacterized protein LOC4347015 isoform X2

      UniProtKB/TrEMBL
      A0A0P0XLK3, A2Z144, Q0J1W6, Q69MX9
      Conserved Domains (1) summary
      pfam10263
      Location:18 → 136
      SprT-like; SprT-like family

    2. XM_015756300.3 → XP_015611786.1  uncharacterized protein LOC4347015 isoform X1

      UniProtKB/TrEMBL
      A2Z144
      Conserved Domains (1) summary
      pfam10263
      Location:18 → 189
      SprT-like; SprT-like family
    Nucleotide Protein
    Heading Accession and Version

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