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    LOC4329991 CLIP-associated protein [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329991, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4329991
    Gene description
    CLIP-associated protein
    Locus tag
    OSNPB_020617300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1014_H03.7-1
    Expression
    Broad expression in roots before flowering (RPKM 14.0), flowers (RPKM 13.3) and 6 other tissues See more
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    Genomic context

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    See LOC4329991 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (24971497..24984759, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (24488772..24502044, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4329989 Neighboring gene uncharacterized LOC4329990 Neighboring gene GDSL esterase/lipase At5g33370 Neighboring gene ATP-dependent DNA helicase MER3 homolog Neighboring gene serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables microtubule binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in microtubule cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasmic microtubule IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    CLIP-associated protein
    Names
    CLIP-associating protein 1-like
    Os02g0617300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      24971497..24984759 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015770928.3 → XP_015626414.1  CLIP-associated protein

      UniProtKB/TrEMBL
      B8AFG5, B9F137
      Conserved Domains (2) summary
      sd00044
      Location:794 → 818
      HEAT; HEAT repeat [structural motif]
      pfam12348
      Location:283 → 501
      CLASP_N; CLASP N terminal

    RNA

    1. XR_003240445.2 RNA Sequence

    2. XR_010739344.1 RNA Sequence

    3. XR_010739343.1 RNA Sequence

    4. XR_001543629.3 RNA Sequence

    5. XR_010739342.1 RNA Sequence

    6. XR_003240444.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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