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    LOC9266083 uncharacterized LOC9266083 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9266083, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC9266083
    Gene description
    uncharacterized LOC9266083
    Locus tag
    OSNPB_080129800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    Os08g0129800
    Expression
    Ubiquitous expression in mature seeds (RPKM 267.3), flower buds (RPKM 139.6) and 6 other tissues See more
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    Genomic context

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    See LOC9266083 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (1687931..1691701)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (1675028..1680591)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene protein CHUP1, chloroplastic Neighboring gene probable UDP-arabinose 4-epimerase 3 Neighboring gene uncharacterized LOC4344586 Neighboring gene protein LOL4-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables SNARE binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in endosome to lysosome transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in lysosome localization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in lysosome organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of synaptic vesicle exocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in synaptic vesicle exocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of BLOC-1 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of BORC complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in synaptic vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC9266083
    Names
    Os08g0129900
    P0582D05.122

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      1687931..1691701
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794259.3 → XP_015649745.1  uncharacterized protein LOC9266083

      UniProtKB/TrEMBL
      A2YQX0, Q84UR2
      Conserved Domains (1) summary
      pfam14712
      Location:38 → 123
      Snapin_Pallidin; Snapin/Pallidin

    RNA

    1. XR_003243819.2 RNA Sequence

    2. XR_001548208.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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