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    LOC4337249 COP9 signalosome complex subunit 5-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337249, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4337249
    Gene description
    COP9 signalosome complex subunit 5-like
    Locus tag
    OSNPB_040654700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    Jab1
    Expression
    Ubiquitous expression in flower buds (RPKM 36.5), leaves after flowering (RPKM 34.3) and 6 other tissues See more
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    Genomic context

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    See LOC4337249 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (33910223..33913578)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (33394491..33397960)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene glycine-rich cell wall structural protein Neighboring gene probable receptor-like serine/threonine-protein kinase At5g57670 Neighboring gene putative receptor protein kinase ZmPK1 Neighboring gene putative receptor protein kinase ZmPK1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Interaction between proliferating cell nuclear antigen and JUN-activation-domain-binding protein 1 in the meristem of rice, Oryza sativa L. Yamamoto T, et al. Planta, 2003 Jun. PMID 12783325
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables deNEDDylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metallopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein deneddylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of COP9 signalosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    COP9 signalosome complex subunit 5-like
    Names
    COP9 signalosome complex subunit 5a
    COP9 signalosome complex subunit 5b
    JUN-activation-domain-binding protein 1
    Os04g0654700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      33910223..33913578
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015781704.2 → XP_015637190.1  COP9 signalosome complex subunit 5-like

      UniProtKB/Swiss-Prot
      Q7XTD8, Q8H936
      UniProtKB/TrEMBL
      B8AVL7, O81388, Q7GC30
      Conserved Domains (1) summary
      cd08069
      Location:49 → 321
      MPN_RPN11_CSN5; Mov34/MPN/PAD-1 family: proteasomal regulatory protein Rpn11 and signalosome complex subunit CSN5
    Nucleotide Protein
    Heading Accession and Version

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