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    LOC4352791 2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 2, chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4352791, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4352791
    Gene description
    2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 2, chloroplastic-like
    Locus tag
    OSNPB_120615400
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    E37; OsJ_36874
    Expression
    Broad expression in leaves before flowering (RPKM 165.6), flowers (RPKM 87.2) and 5 other tissues See more
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    Genomic context

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    See LOC4352791 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (26817126..26819571, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (26101115..26103556, complement)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136354738 Neighboring gene wall-associated receptor kinase 2 Neighboring gene uncharacterized LOC136354739 Neighboring gene putative hydrolase C777.06c Neighboring gene putative hydrolase C777.06c Neighboring gene pentatricopeptide repeat-containing protein At5g41170, mitochondrial Neighboring gene protein DETOXIFICATION 41

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in methylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 2, chloroplastic
    Names
    37 kDa inner envelope membrane protein
    LOC_Os12g42090
    MPBQ/MSBQ methyltransferase
    Protein VTE3 homolog
    NP_001391669.1
    NP_001391670.1
    XP_066162095.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001404740.1 → NP_001391669.1  2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 2, chloroplastic isoform 1

      Status: VALIDATED

      Source sequence(s)
      AK105795, AP014968, AU030611, CA755971, CI223786, CI693432
      UniProtKB/TrEMBL
      Q2QM70

    2. NM_001404741.1 → NP_001391670.1  2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 2, chloroplastic isoform 2

      Status: VALIDATED

      Source sequence(s)
      AK105795, AU029553, CI223786, CI693432
      UniProtKB/Swiss-Prot
      A0A0P0YD53, Q2QM69
      UniProtKB/TrEMBL
      A2ZMQ9

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      26817126..26819571 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066305998.1 → XP_066162095.1  2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 2, chloroplastic isoform X1

      UniProtKB/TrEMBL
      Q2QM70
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q2QM69.2 GenPept UniProtKB/Swiss-Prot:Q2QM69

    Gene LinkOut

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