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    LOC9272111 probable V-type proton ATPase subunit H [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9272111, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC9272111
    Gene description
    probable V-type proton ATPase subunit H
    Locus tag
    OSNPB_070549700
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC9272111 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (22044790..22050598)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (21816555..21822323)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene protein THYLAKOID ASSEMBLY 8-like, chloroplastic Neighboring gene transcription factor UDT1-like Neighboring gene uncharacterized LOC112939648 Neighboring gene organelle RRM domain-containing protein 2, mitochondrial Neighboring gene histone H4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables proton-transporting ATPase activity, rotational mechanism IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proton transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of vacuolar proton-transporting V-type ATPase, V1 domain IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable V-type proton ATPase subunit H
    Names
    LOC_Os07g36470
    P0534A03.126
    V-ATPase subunit H
    Vacuolar proton pump subunit H
    putative vacuolar ATP synthase subunit H

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001404929.1 → NP_001391858.1  probable V-type proton ATPase subunit H

      Status: VALIDATED

      Source sequence(s)
      C74913, CB000211, CB685152, CI000493, CI022212, CI590900
      UniProtKB/Swiss-Prot
      Q0D5M5, Q84ZC0
      UniProtKB/TrEMBL
      B7EDV8

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      22044790..22050598
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066312026.1 → XP_066168123.1  probable V-type proton ATPase subunit H isoform X1

      UniProtKB/Swiss-Prot
      Q0D5M5, Q84ZC0
      UniProtKB/TrEMBL
      B7EDV8
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q84ZC0.1 GenPept UniProtKB/Swiss-Prot:Q84ZC0

    Gene LinkOut

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    Molecular Biology Databases
    Research Materials