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    LOC9267158 putative lipoxygenase 5 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9267158, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC9267158
    Gene description
    putative lipoxygenase 5
    Locus tag
    OSNPB_040447100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    LOX6
    Expression
    Biased expression in roots before flowering (RPKM 369.3) and leaves before flowering (RPKM 11.0) See more
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    Genomic context

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    See LOC9267158 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (22797302..22801773)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (22304767..22309335)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At1g09900-like Neighboring gene uncharacterized LOC107280682 Neighboring gene glutamate decarboxylase Neighboring gene D-galacturonate reductase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lipid oxidation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative lipoxygenase 5
    Names
    Os04g0447100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      22797302..22801773
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015781696.3 → XP_015637182.1  putative lipoxygenase 5

      UniProtKB/Swiss-Prot
      Q7XV13
      UniProtKB/TrEMBL
      Q01J86
      Conserved Domains (3) summary
      PLN02264
      Location:49 → 922
      PLN02264; lipoxygenase
      cd01751
      Location:102 → 228
      PLAT_LH2; PLAT/ LH2 domain of plant lipoxygenase related proteins. Lipoxygenases are nonheme, nonsulfur iron dioxygenases that act on lipid substrates containing one or more (Z,Z)-1,4-pentadiene moieties. In plants, the immediate products are involved in defense ...
      pfam00305
      Location:239 → 905
      Lipoxygenase; Lipoxygenase
    Nucleotide Protein
    Heading Accession and Version

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