U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4340070 homeobox-leucine zipper protein HOX2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340070, updated on 16-Jul-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4340070
    Gene description
    homeobox-leucine zipper protein HOX2-like
    Locus tag
    OSNPB_060140700
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    HOX2; OsHox2; OsJ_20069; OsJ_019261
    Expression
    Broad expression in flowers (RPKM 8.0), flower buds (RPKM 7.2) and 5 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4340070 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (2294998..2296503)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (2137455..2139092)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene receptor-like protein EIX1 Neighboring gene homeobox-leucine zipper protein HOX28-like Neighboring gene U-box domain-containing protein 35 Neighboring gene hexose carrier protein HEX6

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    homeobox-leucine zipper protein HOX2
    Names
    HD-ZIP protein HOX2
    Homeodomain transcription factor HOX2
    LOC_Os06g04870
    OSJNBa0041F13.48
    homeodomain leucine zipper protein

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001421067.1 → NP_001407996.1  homeobox-leucine zipper protein HOX2

      Status: VALIDATED

      Source sequence(s)
      AK105150, CI136537, CI295463
      UniProtKB/Swiss-Prot
      A2Y933, A3B889, A5JPT9, B7EXL8, Q5VPE3, Q84U86, Q9XH39
      UniProtKB/TrEMBL
      B8B2B6

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      2294998..2296503
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5VPE3.1 GenPept UniProtKB/Swiss-Prot:Q5VPE3

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials