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    LOC4349561 xylan O-acetyltransferase 12-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349561, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4349561
    Gene description
    xylan O-acetyltransferase 12-like
    Locus tag
    OSNPB_110107000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    XOAT12
    Expression
    Biased expression in roots before flowering (RPKM 6.9), flower buds (RPKM 4.8) and 2 other tissues See more
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    Genomic context

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    See LOC4349561 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (370671..374834)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (328821..332822)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene protein DOUBLE-STRAND BREAK FORMATION Neighboring gene LOB domain-containing protein 12 Neighboring gene vegetative cell wall protein gp1-like Neighboring gene cation/calcium exchanger 1 Neighboring gene uncharacterized LOC4349562 Neighboring gene uncharacterized LOC9267534

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Biochemical characterization of rice xylan O-acetyltransferases. Zhong R, et al. Planta, 2018 Jun. PMID 29569182
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables O-acetyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    xylan O-acetyltransferase 12-like
    Names
    Os11g0107000
    xylan O-acetyltransferase 12

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      370671..374834
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015760042.3 → XP_015615528.1  xylan O-acetyltransferase 12-like

      UniProtKB/Swiss-Prot
      B9G8Z5, Q2RBL8
      UniProtKB/TrEMBL
      B8BIN2, B8BNU0
      Conserved Domains (2) summary
      pfam13839
      Location:206 → 499
      PC-Esterase; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
      pfam14416
      Location:151 → 205
      PMR5N; PMR5 N terminal Domain
    Nucleotide Protein
    Heading Accession and Version

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