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    LOC4324606 inactive protein kinase SELMODRAFT_444075 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324606, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4324606
    Gene description
    inactive protein kinase SELMODRAFT_444075
    Locus tag
    OSNPB_010602800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0681B11.2
    Expression
    Broad expression in flowers (RPKM 16.3), flower buds (RPKM 14.0) and 6 other tissues See more
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    Genomic context

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    See LOC4324606 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (24302455..24307734)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (23727721..23733078)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene cytochrome P450 CYP72A616 Neighboring gene chalcone synthase 4-like Neighboring gene RGG repeats nuclear RNA binding protein A Neighboring gene disease resistance protein RGA5-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    inactive protein kinase SELMODRAFT_444075
    Names
    B1085F01.22
    Os01g0602800
    dual-specific kinase DSK1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      24302455..24307734
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015793256.3 → XP_015648742.1  inactive protein kinase SELMODRAFT_444075 isoform X2

      UniProtKB/TrEMBL
      B7F9R5, B9EXX8
      Conserved Domains (2) summary
      cd00293
      Location:47 → 152
      USP_Like; Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to ...
      cd14066
      Location:415 → 681
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

    2. XM_026026955.2 → XP_025882740.1  inactive protein kinase SELMODRAFT_444075 isoform X2

      UniProtKB/TrEMBL
      B7F9R5, B9EXX8
      Conserved Domains (2) summary
      cd00293
      Location:47 → 152
      USP_Like; Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to ...
      cd14066
      Location:415 → 681
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

    3. XM_066305731.1 → XP_066161828.1  inactive protein kinase SELMODRAFT_444075 isoform X1

    4. XM_015793266.3 → XP_015648752.1  inactive protein kinase SELMODRAFT_444075 isoform X2

      UniProtKB/TrEMBL
      B7F9R5, B9EXX8
      Conserved Domains (2) summary
      cd00293
      Location:47 → 152
      USP_Like; Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to ...
      cd14066
      Location:415 → 681
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
    Nucleotide Protein
    Heading Accession and Version

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