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    LOC4333668 protein WHAT'S THIS FACTOR 1 homolog, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333668, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4333668
    Gene description
    protein WHAT'S THIS FACTOR 1 homolog, chloroplastic
    Locus tag
    OSNPB_030667400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 4.9), flower buds (RPKM 4.0) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (27149617..27152081)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (26282031..26287150)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1-like Neighboring gene BTB/POZ domain and ankyrin repeat-containing protein NPR3-like Neighboring gene fe(2+) transport protein 2-like Neighboring gene uncharacterized LOC136355796 Neighboring gene fe(2+) transport protein 1-like Neighboring gene uncharacterized LOC9266519

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein WHAT'S THIS FACTOR 1 homolog, chloroplastic
    Names
    Os03g0667400
    protein WHAT'S THIS FACTOR 1 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      27149617..27152081
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015776887.3 → XP_015632373.1  protein WHAT'S THIS FACTOR 1 homolog, chloroplastic

      UniProtKB/TrEMBL
      A2XKF0, Q10FH7, Q60DL7, Q75HB0
      Conserved Domains (1) summary
      pfam11955
      Location:42 → 373
      PORR; Plant organelle RNA recognition domain
    Nucleotide Protein
    Heading Accession and Version

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