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    LOC4325071 fructose-1,6-bisphosphatase, cytosolic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325071, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4325071
    Gene description
    fructose-1,6-bisphosphatase, cytosolic
    Locus tag
    OSNPB_010866400
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    FBP1; MOC2; CFBP1; FBPase
    Expression
    Broad expression in leaves before flowering (RPKM 67.9), mature seeds (RPKM 47.6) and 5 other tissues See more
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    Genomic context

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    See LOC4325071 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (38147108..38150183)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (37519487..37522458)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene histone H3.2 Neighboring gene VAMP-like protein YKT61 Neighboring gene soluble inorganic pyrophosphatase Neighboring gene protein BOLA2 Neighboring gene sm-like protein LSM3A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables fructose 1,6-bisphosphate 1-phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in fructose 1,6-bisphosphate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in fructose 6-phosphate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in fructose metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in gluconeogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sucrose biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    fructose-1,6-bisphosphatase, cytosolic
    Names
    D-fructose-1,6-bisphosphate 1-phosphohydrolase
    LOC_Os01g64660
    P0505D12.36
    Protein MONOCULM 2
    fructose-1,6-bisphosphatase 1
    NP_001393117.1
    XP_066166609.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001406188.1 → NP_001393117.1  fructose-1,6-bisphosphatase, cytosolic

      Status: VALIDATED

      Source sequence(s)
      AU055792, CB678889, CF294142, CI641847
      UniProtKB/Swiss-Prot
      A0A0P0VAT7, A2WXB2, A7J2C2, B8A6X6, O64421, Q0JHF8, Q5N9E2, Q94JN1

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      38147108..38150183
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066310512.1 → XP_066166609.1  fructose-1,6-bisphosphatase, cytosolic isoform X1

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0JHF8.2 GenPept UniProtKB/Swiss-Prot:Q0JHF8

    Gene LinkOut

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