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    LOC4337583 cytochrome b5-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337583, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4337583
    Gene description
    cytochrome b5-like
    Locus tag
    OSNPB_050108800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsJ_16839
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 237.3), roots after flowering (RPKM 206.7) and 6 other tissues See more
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    Genomic context

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    See LOC4337583 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (502698..504771)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (492256..494266)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene cysteine protease XCP2 Neighboring gene uncharacterized LOC136356484 Neighboring gene uncharacterized LOC136356516 Neighboring gene uncharacterized LOC107276499

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables heme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in intracellular membrane-bounded organelle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cytochrome b5
    Names
    LOC_Os05g01820
    OSJNBa0068N01.16
    cytochrome b5 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402473.1 → NP_001389402.1  cytochrome b5

      Status: VALIDATED

      Source sequence(s)
      AU163849, AU164945, AU181087, CV730358
      UniProtKB/Swiss-Prot
      P49100, Q0DLC5, Q65X19, Q94HK6
      UniProtKB/TrEMBL
      A2XZJ1, I3QD60

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      502698..504771
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P49100.2 GenPept UniProtKB/Swiss-Prot:P49100

    Gene LinkOut

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