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    LOC4334605 receptor-like cytoplasmic kinase 176 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334605, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4334605
    Gene description
    receptor-like cytoplasmic kinase 176
    Locus tag
    OSNPB_030821900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4334605 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (35476119..35480822)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (34502943..34507769)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At4g21065 Neighboring gene uncharacterized LOC4334604 Neighboring gene expansin-A7-like Neighboring gene zinc finger BED domain-containing protein RICESLEEPER 2-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    receptor-like cytoplasmic kinase 176
    Names
    Os03g0821900
    protein kinase APK1A, chloroplastic

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      35476119..35480822
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015776449.3 → XP_015631935.1  receptor-like cytoplasmic kinase 176 isoform X1

      UniProtKB/TrEMBL
      A0A0P0W5E7
      Conserved Domains (2) summary
      smart00219
      Location:81 → 398
      TyrKc; Tyrosine kinase, catalytic domain
      cd14066
      Location:84 → 401
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

    2. XM_015776450.3 → XP_015631936.1  receptor-like cytoplasmic kinase 176 isoform X2

      UniProtKB/TrEMBL
      A0A0P0W5E7, B8AMC3, B9F709, Q10BD9
      Conserved Domains (1) summary
      cd14066
      Location:84 → 363
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
    Nucleotide Protein
    Heading Accession and Version

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