LOC4342862 metal transporter Nramp1-like [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4342862
Gene description: metal transporter Nramp1-like
Locus tag: OSNPB_070258400
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: Nramp1; OsNramp1; OsJ_23752; OJ1354_H07.109
Expression: Restricted expression toward leaves before flowering (RPKM 432.9) See more
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 7

Exon count:: 13

Annotation release	Status	Assembly	Chr	Location
RS_2024_06	current	ASM3414082v1 (GCF_034140825.1)	7	NC_089041.1 (9047200..9052036)
102	previous assembly	IRGSP-1.0 (GCF_001433935.1)	7	NC_029262.1 (8965999..8970870)

Chromosome 7 - NC_089041.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help

See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

OsNRAMP1 transporter contributes to cadmium and manganese uptake in rice.
Title: OsNRAMP1 transporter contributes to cadmium and manganese uptake in rice.
NRAMP plays a role in xylem mediated loading and enhanced accumulation of arsenic (As) and cadmium (Cd) in plants.
Title: Expression in Arabidopsis and cellular localization reveal involvement of rice NRAMP, OsNRAMP1, in arsenic transport and tolerance.
NRAMP1 is one of the crucial proteins responsible for higher Cd accumulation in rice.
Title: Role of the iron transporter OsNRAMP1 in cadmium uptake and accumulation in rice.
The OsNRAMP1(Os07g0258400) iron transporter is involved in Cd accumulation.
Title: The OsNRAMP1 iron transporter is involved in Cd accumulation in rice.

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables cadmium ion transmembrane transporter activity	IEA Inferred from Electronic Annotation more info	PubMed
enables manganese ion transmembrane transporter activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in metal ion transport	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

Go to the top of the page Help

Preferred Names: metal transporter Nramp1

Names: LOC_Os07g15460; rice Nramp1 protein(Natural-resistance-associated macrophage protein 1)

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.