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    LOC4330946 large ribosomal subunit protein eL33w [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330946, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4330946
    Gene description
    large ribosomal subunit protein eL33w
    Locus tag
    OSNPB_020785800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1316_E06.5; OJ1715_H01.42
    Expression
    Ubiquitous expression in flower buds (RPKM 229.0), mature seeds (RPKM 219.6) and 6 other tissues See more
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    Genomic context

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    See LOC4330946 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (33855418..33857439)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (33359338..33361384)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene beta-1,3-galactosyltransferase pvg3 Neighboring gene E3 ubiquitin ligase PARAQUAT TOLERANCE 3-like Neighboring gene anaphase-promoting complex subunit 4 Neighboring gene uncharacterized LOC9267267

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytoplasmic translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ribosomal large subunit biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic large ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    large ribosomal subunit protein eL33w
    Names
    60S ribosomal protein L35a-1
    Os02g0785800
    putative ribosomal protein L35A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      33855418..33857439
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015772125.2 → XP_015627611.1  large ribosomal subunit protein eL33w

      UniProtKB/TrEMBL
      A0A0P0VQE4, A6N0V2, A6N1I6, Q6K8U8, Q6K9J5
      Conserved Domains (1) summary
      PTZ00041
      Location:3 → 112
      PTZ00041; 60S ribosomal protein L35a; Provisional
    Nucleotide Protein
    Heading Accession and Version

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