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    LOC4334806 pantoate--beta-alanine ligase-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334806, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4334806
    Gene description
    pantoate--beta-alanine ligase-like
    Locus tag
    OSNPB_030851800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    panC
    Expression
    Broad expression in leaves after flowering (RPKM 23.4), roots after flowering (RPKM 17.1) and 6 other tissues See more
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    Genomic context

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    See LOC4334806 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (36843411..36846450)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (35864747..35867797)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4334804 Neighboring gene ankyrin repeat domain-containing protein 2A Neighboring gene uncharacterized LOC4334807 Neighboring gene uncharacterized protein At5g65660 Neighboring gene putative pentatricopeptide repeat-containing protein At1g03510

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. The final step of pantothenate biosynthesis in higher plants: cloning and characterization of pantothenate synthetase from Lotus japonicus and Oryza sativum (rice). Genschel U, et al. Biochem J, 1999 Aug 1. PMID 10417331, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables pantoate-beta-alanine ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in pantothenate biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pantoate--beta-alanine ligase
    Names
    LOC_Os03g63490
    OSJNBa0015N08.21
    Pantoate-activating enzyme
    Pantothenate synthetase
    NP_001389254.1
    NP_001389255.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402325.1 → NP_001389254.1  pantoate--beta-alanine ligase

      Status: VALIDATED

      Source sequence(s)
      AK104812, CI672350
      UniProtKB/Swiss-Prot
      A0A0P0W5L1, O24210, Q10AH8, Q851Y0
      UniProtKB/TrEMBL
      A0A0P0W5J4, A2XP53

    2. NM_001402326.1 → NP_001389255.1  pantoate--beta-alanine ligase

      Status: VALIDATED

      Source sequence(s)
      AK104812, AP014959, CI571375
      UniProtKB/Swiss-Prot
      A0A0P0W5L1, O24210, Q10AH8, Q851Y0
      UniProtKB/TrEMBL
      A0A0P0W5J4, A2XP53

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      36843411..36846450
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O24210.2 GenPept UniProtKB/Swiss-Prot:O24210

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