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    LOC4349190 uncharacterized LOC4349190 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349190, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4349190
    Gene description
    uncharacterized LOC4349190
    Locus tag
    OSNPB_100528300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in roots before flowering (RPKM 89.7), milk grains (RPKM 10.4) and 2 other tissues See more
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    Genomic context

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    See LOC4349190 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (21247988..21252205)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (20556387..20560662)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene LRR receptor-like serine/threonine-protein kinase FLS2 Neighboring gene uncharacterized LOC4349188 Neighboring gene probable glutathione S-transferase GSTU6 Neighboring gene probable glutathione S-transferase GSTU6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Organisation and structural evolution of the rice glutathione S-transferase gene family. Soranzo N, et al. Mol Genet Genomics, 2004 Jun. PMID 15069639
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables glutathione transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glutathione metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4349190
    Names
    Os10g0528300
    Os10g0528400
    glutathione S-transferase
    putative glutathione S-transferase OsGSTU3
    putative glutathione S-transferase OsGSTU4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      21247988..21252205
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015758237.3 → XP_015613723.1  uncharacterized protein LOC4349190

      Conserved Domains (3) summary
      cd03185
      Location:95 → 223
      GST_C_Tau; C-terminal, alpha helical domain of Class Tau Glutathione S-transferases
      COG0625
      Location:265 → 466
      GstA; Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
      cd03058
      Location:265 → 338
      GST_N_Tau; GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, ...
    Nucleotide Protein
    Heading Accession and Version

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