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    LOC4333240 receptor-like serine/threonine-protein kinase SD1-8 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333240, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4333240
    Gene description
    receptor-like serine/threonine-protein kinase SD1-8
    Locus tag
    OSNPB_030556600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4333240 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (20583907..20588381)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (19726680..19731248)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107280308 Neighboring gene uncharacterized LOC9270596 Neighboring gene uncharacterized LOC9271084 Neighboring gene uncharacterized LOC136355561

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in recognition of pollen IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    receptor-like serine/threonine-protein kinase SD1-8
    Names
    G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290
    Os03g0556600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      20583907..20588381
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015772684.3 → XP_015628170.1  receptor-like serine/threonine-protein kinase SD1-8

      UniProtKB/TrEMBL
      A0A0P0VZA7, A2XII0, Q7Y1P1
      Conserved Domains (4) summary
      cd14066
      Location:558 → 824
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
      pfam00954
      Location:213 → 323
      S_locus_glycop; S-locus glycoprotein domain
      pfam01453
      Location:76 → 181
      B_lectin; D-mannose binding lectin
      pfam08276
      Location:344 → 411
      PAN_2; PAN-like domain
    Nucleotide Protein
    Heading Accession and Version

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